We study behaviour of gravitational waves in the recently introduced general relativistic polytropic spheres containing a region of trapped null geodesics extended around radius of the stable null circular geodesic that can exist for the polytropic index N > 2.138 and the relativistic parameter, giving ratio of the central pressure p_c to the central energy density rho_c, higher than sigma = 0.677. In the trapping zones of such polytropes, the effective potential of the axial gravitational wave perturbations resembles those related to the ultracompact uniform density objects, giving thus similar long-lived axial gravitational modes. These long-lived linear perturbations are related to the stable circular null geodesic and due to additional non-linear phenomena could lead to conversion of the trapping zone to a black hole. We give in the eikonal limit examples of the long-lived gravitational modes, their oscillatory frequencies and slow damping rates, for the trapping zones of the polytropes with N is an element of (2.138, 4). However, in the trapping polytropes the long-lived damped modes exist only for very large values of the multipole number l > 50, while for smaller values of l the numerical calculations indicate existence of fast growing unstable axial gravitational modes. We demonstrate that for polytropes with N >= 3.78, the trapping region is by many orders smaller than extension of the polytrope, and the mass contained in the trapping zone is about 10^(-3) of the total mass of the polytrope. Therefore, the gravitational instability of such trapping zones could serve as a model explaining creation of central supermassive black holes in galactic halos or galaxy clusters.